Thaumarchaeota

Thaumarchaeota
Klasifikasi ilmiah
Domain:	Archaea
Kerajaan:	"Proteoarchaeota"
Filum:	"Thaumarchaeota" Brochier-Armanet et al. 2008
Kelas
	Nitrososphaeria Stieglmeier et al. 2014 "Candidatus Caldiarchaeum" Nunoura et al. 2011 "Candidatus Caldiarchaeum subterraneum" Nunoura et al. 2011; ; "Candidatus Giganthauma" Muller et al. 2010 "Candidatus Giganthauma insulaporcus" Muller et al. 2010; "Candidatus Giganthauma karukerense" Muller et al. 2010; ; "Candidatus Nitrosopelagicus" Santoro et al. 2014 "Candidatus Nitrosopelagicus brevis" Santoro et al. 2014; ; "Candidatus Nitrosotalea" Lehtovirta 2011 "Candidatus Nitrosotalea devanaterra" Lehtovirta 2011; ; Cenarchaeales Cavalier-Smith 2002 "Cenarchaeaceae" DeLong and Preston 1996 Cenarchaeum ♠ DeLong and Preston 1996 Cenarchaeum symbiosum ♠ DeLong and Preston 1996; ; ; ; Nitrososphaerales Michaela Stieglmeier et al. 2014 Nitrososphaeraceae Michaela Stieglmeier et al. 2014 Nitrososphaera Michaela Stieglmeier et al. 2014 "Candidatus Nitrososphaera evergladensis" Zhainina et al. 2013; "Candidatus Nitrososphaera gargensis" Hatzenpichler et al. 2008; Nitrososphaera viennensis Michaela Stieglmeier et al. 2014; ; ; ; "Candidatus Nitrosopumilales" Konneke et al. 2005 "Candidatus Nitrosopumilaceae" Konneke et al. 2005 "Candidatus Nitrosoarchaeum" Blainey et al. 2011 "Candidatus Nitrosoarchaeum koreensis" Kim et al. 2011; "Candidatus Nitrosoarchaeum limnia" Blainey et al. 2011; ; "Candidatus Nitrosotenuis" Lebedeva et al. 2013 "Candidatus Nitrosotenuis uzonensis" Lebedeva et al. 2013; ; "Candidatus Nitrosopumilus" Konneke et al. 2005 "Candidatus Nitrosopumilus koreensis" Park et al. 2012; "Candidatus Nitrosopumilus salaria" Mosier et al. 2012; "Candidatus Nitrosopumilus maritimus" Konneke et al. 2005; ; ; ;

Thaumarchaeota atau Thaumarchaea (dari bahasa Yunani 'thaumas', yang berarti heran) adalah filum dari Archaea diusulkan pada tahun 2008 setelah genom Cenarchaeum symbiosum dibariskan dan ditemukan berbeda secara signifikan dari anggota lain dari filum hipertermofilik crenarchaeota.^[1]^[2] Tiga spesies dijelaskan selain C. symbosium adalah Nitrosopumilus maritimus, Nitrososphaera viennensis, dan Nitrososphaera gargensis.^[2] Semua organisme dari garis keturunan ini sejauh diidentifikasi adalah kemolitoautotrofik pengoksidasi-amonia dan mungkin memainkan peran penting dalam siklus biogeokimia, seperti siklus nitrogen dan siklus karbon.

Filum diusulkan pada tahun 2008 berdasarkan data filogenetik, seperti urutan gen RNA ribosomal organisme ini, dan adanya bentuk tipe I topoisomerase yang sebelumnya dianggap unik untuk eukariota.^[2]^[3] Tugas ini dikonfirmasi oleh analisis lebih lanjut diterbitkan pada tahun 2010 yang meneliti genom dari archaea Nitrosopumilus maritimus amonia-oksidasi dan Nitrososphaera gargensis, menyimpulkan bahwa spesies ini membentuk garis keturunan yang berbeda yang mencakup Cenarchaeum symbiosum.^[4]

Lihat pula sunting

Hipotesis eosit

Referensi sunting

^ Tourna, Maria; Stieglmeier, Michaela; Spang, Anja; Könneke, Martin; Schintlmeister, Arno; Urich, Tim; Engel, Marion; Schloter, Michael; Wagner, Michael; et al. (2011). "Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil". Proceedings of the National Academy of Sciences. 108 (20): 8420–5. doi:10.1073/pnas.1013488108. PMC 3100973  . PMID 21525411.
^ ^a ^b ^c Brochier-Armanet, Céline; Boussau, Bastien; Gribaldo, Simonetta; Forterre, Patrick (2008). "Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota". Nature Reviews Microbiology. 6 (3): 245–52. doi:10.1038/nrmicro1852. PMID 18274537.
^ Brochier-Armanet, Céline; Gribaldo, Simonetta; Forterre, Patrick (2008). "A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya". Biology Direct. 3: 54. doi:10.1186/1745-6150-3-54. PMC 2621148  . PMID 19105819.
^ Spang, Anja; Hatzenpichler, Roland; Brochier-Armanet, Céline; Rattei, Thomas; Tischler, Patrick; Spieck, Eva; Streit, Wolfgang; Stahl, David A.; Wagner, Michael; et al. (2010). "Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota". Trends in Microbiology. 18 (8): 331–40. doi:10.1016/j.tim.2010.06.003. PMID 20598889.

Bacaan lebih lanjut sunting

Yanagawa, Katsunori; Breuker, A.; Schippers, A.; Nishizawa, M.; Ijiri, A.; Hirai, M.; Takaki, Y.; Sunamura, M.; Urabe, T.; Nunoura, T.; Takai, K. (October 2014). "Microbial Community Stratification Controlled by the Subseafloor Fluid Flow and Geothermal Gradient at the Iheya North Hydrothermal Field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)". Applied and Environmental Microbiology. 80 (19): 6126–6135. doi:10.1128/AEM.01741-14. PMID 25063666.
Wu, Yucheng; Conrad, Ralf (July 2014). "Ammonia oxidation-dependent growth of group I.1b in acidic red soil microcosms". FEMS Microbiology Ecology. 89 (1): 127–134. doi:10.1111/1574-6941.12340. PMID 24724989.
Deschamps, Philippe; Zivanovic, Yvan; Moreira, David; Rodriguez-Valera, Francisco; Lopez-Garcia, Purificacion (8 June 2014). "Pangenome Evidence for Extensive Interdomain Horizontal Transfer Affecting Lineage Core and Shell Genes in Uncultured Planktonic Thaumarchaeota and Euryarchaeota". Genome Biology and Evolution. 6 (7): 1549–1563. doi:10.1093/gbe/evu127. PMID 24923324.
Zhalnina, Kateryna; Dias, Raquel; Leonard, Michael; Dorr de Quadros, Patricia; Camargo, Flavio; Drew, Jennifer; Farmerie, William; Daroub, Samira; Triplett, Eric (7 July 2014). "Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea". PLoS ONE (2014). 9 (7): e101648. doi:10.1371/journal.pone.0101648. PMC 4084955  . PMID 24999826.

Templat:Archaea-stub

[1] Tourna, Maria; Stieglmeier, Michaela; Spang, Anja; Könneke, Martin; Schintlmeister, Arno; Urich, Tim; Engel, Marion; Schloter, Michael; Wagner, Michael; et al. (2011). "Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil". Proceedings of the National Academy of Sciences. 108 (20): 8420–5. doi:10.1073/pnas.1013488108. PMC 3100973  . PMID 21525411.

[Brochier-Armanet-2] Brochier-Armanet, Céline; Boussau, Bastien; Gribaldo, Simonetta; Forterre, Patrick (2008). "Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota". Nature Reviews Microbiology. 6 (3): 245–52. doi:10.1038/nrmicro1852. PMID 18274537.

[3] Brochier-Armanet, Céline; Gribaldo, Simonetta; Forterre, Patrick (2008). "A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya". Biology Direct. 3: 54. doi:10.1186/1745-6150-3-54. PMC 2621148  . PMID 19105819.

[4] Spang, Anja; Hatzenpichler, Roland; Brochier-Armanet, Céline; Rattei, Thomas; Tischler, Patrick; Spieck, Eva; Streit, Wolfgang; Stahl, David A.; Wagner, Michael; et al. (2010). "Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota". Trends in Microbiology. 18 (8): 331–40. doi:10.1016/j.tim.2010.06.003. PMID 20598889.

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